Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001055
Fusion event
HBV-FAM157B integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
End
141127136/138236686 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7a-1/Upstream/398170;
Nearest TSS
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/15546, None/Downstream
Upstream sequence
TTGGGGTAGCTGTCTTCTACATCCCCCAGCTGCACTCTCCCTCTTGTGGGACACATCCACTTCCCCACCCCTGCAgaggtcagaggaggcaggaggagga
Downstream sequence
ggttaggcttagggcttagggcttagggctagggctagggctagggctagagttagggttgggttagggttgggttagggtagggttagggttaggggtt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.