C7orf50 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001067
Fusion event
HBV-C7orf50 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
1164342/1124706 (Hg38)
End
1164342/1124706 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA7B
Target gene
C7orf50
Nearest miRNA
hsa-mir-339/Upstream/101680; hsa-mir-10399/Downstream/719474;
Nearest TSS
ENST00000635602/Upstream/31768; ENST00000413706/Downstream/2682;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/6897, chr7-CpG: 75/Downstream/13237
Upstream sequence
cctcctgggttcaagggatcctgtcatctcagcctcccaagtagctgggactataggcctgagccccaccatgcctggctaagtttttttattgttatta
Downstream sequence
gtataataataaaaaataaaAAAAATTTTAAAAAAGCACAAAAAAAAAAAAAAAGAGGCAGTCAGCCTGGGAGACACAGGAATTCAACAGCCTGCGGAGG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate