ADRA1D _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001070
Fusion event
HBV-ADRA1D integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr20
Cytoband
p13
Reference genome
GRCh37/hg19
Start
4211730/4231083 (Hg38)
End
4211730/4231083 (Hg38)
Location type
Intronic
Target gene
ADRA1D
Nearest miRNA
hsa-mir-103a-2/Upstream/313512; hsa-mir-1-1/Downstream/3140525;
Nearest TSS
ENST00000382410/Upstream/8702; ENST00000419863/Downstream/17991;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/8965, chr20-CpG: 217/Downstream/16802
Upstream sequence
GTATGGGACtctttctttccttctttgctttcttttctctttctctttctttctttttctttctttctttctttctttctttctctctctctctctctct
Downstream sequence
tttcttttcttttctttctttctttctctctttctgtttttagagactgggtcttgctgtcacccaggttggagtgcagtggtgcaatcatggctcaccg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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