Basic Information
VIS ID
TVIS10001074
Fusion event
HBV-LINC00486 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
33091956/32866889 (Hg38)
End
33091956/32866889 (Hg38)
Location type
ncRNA_intronic
Target gene
LINC00486
Nearest miRNA
hsa-mir-1301/Upstream/231558; hsa-mir-10b/Downstream/551627;
Nearest TSS
ENST00000437798/Upstream/25875; ENST00000435075/Downstream/15912;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/238686, chr2-CpG: 164/Downstream/79492
Upstream sequence
ttttttttttttttttttttttttcttctttttctttttttttttttttttttttctttttttttttttcttctttttttttttttttttttttcttttc
Downstream sequence
tttttttttttttttttttttcttttttttttttttttttttttttttttcttttttttttttctttttttttttttttttttttctcttcttttttttt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate