Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene331058143262803232821051328254433292669332863678328663413282471632825487328244543282460332866923
Basic Information
VIS ID
TVIS10001075
Fusion event
HBV-LINC00486 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
33091990/32866923 (Hg38)
End
33091990/32866923 (Hg38)
Location type
ncRNA_intronic
Target gene
LINC00486
Nearest miRNA
hsa-mir-1301/Upstream/231592; hsa-mir-10b/Downstream/551593;
Nearest TSS
ENST00000437798/Upstream/25909; ENST00000435075/Downstream/15878;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/238720, chr2-CpG: 164/Downstream/79458
Upstream sequence
tttttttttttttttttttttctttttttttttttcttctttttttttttttttttttttcttttctttttttttttttttttttttctttttttttttt
Downstream sequence
ttttttttttttttttcttttttttttttctttttttttttttttttttttctcttctttttttttttttttttttttttctttttttttttcttctttc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate