Basic Information
VIS ID
TVIS10001084
Fusion event
HBV-chr18 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr18
Cytoband
p11.32
Reference genome
End
105578/105578 (Hg38)
Location type
Promoter;downstream
Target gene
Nearest miRNA
hsa-mir-1-2/Downstream/6678;
Upstream sequence
acccgaatccaaacttgaacctgaaccctaagccttaccctaagcctaagcctaacccctaaccctaaccctaaccctaaacctaatgctcaccctaacc
Downstream sequence
ctaaccctcaccctcaccctgaccctcaccctcaccctgaccctcaccctgaccctcaccctgaccctcaccctaaccctaaccctcaccctCGCcattg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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