hsa-mir-6856-3p _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001092
Fusion event
HBV-chr5 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
1312517/1312402 (Hg38)
End
1312517/1312402 (Hg38)
Location type
Promoter;downstream
Target gene
CLPTM1L ; MIR4457
miRNAs that regulate target gene
hsa-mir-22-3p ; hsa-mir-5093 ; hsa-mir-203a-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-3688-3p ; hsa-mir-4694-3p ; hsa-mir-6856-3p
Nearest miRNA
hsa-mir-4457/Upstream/3025; hsa-mir-10397/Downstream/198360;
Nearest TSS
ENST00000502646/Upstream/17333; ENST00000605200/Downstream/9427;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/16547, chr5-CpG: 18/Downstream/22560
Upstream sequence
CAATGCCCTATTTAAGGAATAGTGGGCACTCCAGGGACCAGAGCTAGATAGTCATCCTGAAACAGAGATCAGGGTTATGCTTGACAAAATGAAGCATCAG
Downstream sequence
GGTGTCACGTAAATCAAGACAGTGCTATGCCAATGTCATGCCAAGGCAGTTGATATTTGggccaggcgcagtggtgcacacctgtagtcctagcactttg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate