CTNND2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001093
Fusion event
HBV-CTNND2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
11349649/11349537 (Hg38)
End
11349649/11349537 (Hg38)
Location type
Intronic
Target gene
CTNND2
Nearest miRNA
hsa-mir-10397/Upstream/871392; hsa-mir-103a-1/Downstream/3476392;
Nearest TSS
ENST00000502646/Upstream/232045; ENST00000505877/Downstream/35234;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/587724, chr5-CpG: 115/Downstream/35032
Nearest cancer related gene
CTNND2(OG, No orient, 0)
Upstream sequence
ATAGTCATCCTGAAACAGAGATCAGGGTTATGCTTGACAAAATGAAGCATCAGttttgtttttttttttttttttttttttttttttttttttttttttt
Downstream sequence
GGGCAGGTTTAAAACCTCAAAGCTGTAGATTATTGAATTACCTAATACGGTCAGAAAACTTAGAAAAACGGTGAGGCCTGAAACGAAAGGAAATGTCTAC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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