Basic Information
VIS ID
TVIS10001101
Fusion event
HBV-chr5 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
q15
Reference genome
GRCh37/hg19
Start
97332768/97997064 (Hg38)
End
97332768/97997064 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA5B
Nearest miRNA
hsa-mir-10397/Upstream/1917852; hsa-mir-103a-1/Downstream/2819418;
Nearest TSS
ENST00000502646/Upstream/115636; ENST00000505265/Downstream/164129;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/813123, chr5-CpG: 135/Downstream/771810
Nearby gene
LINC01340(-326013) ; RGMB(+772231) ;
Upstream sequence
aggagaattgcttgaacccgggaggtggaggttgtggtgagccgagattgtgccactgtactcaagcctgggctaaaaagcgagactccgtctcaaaaaa
Downstream sequence
ttggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgcagggacatggataaagctggaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate