Basic Information
VIS ID
TVIS10001102
Fusion event
HBV-LINC02141 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
q21
Reference genome
GRCh37/hg19
Start
59939797/59905893 (Hg38)
End
59939797/59905893 (Hg38)
Location type
Intronic
Target gene
LINC02141
Nearest miRNA
hsa-mir-1225/Upstream/2133541; hsa-mir-11401/Downstream/7296428;
Nearest TSS
ENST00000527434/Upstream/50540; ENST00000565506/Downstream/453587;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/150725, chr16-CpG: 117/Downstream/2129324
Nearby gene
APOOP5(-150702) ; NPAP1L(+452562) ;
Upstream sequence
AAAAAATTACTGAGTTTATTTTGATTGTGTAACTCCAGTGGATATAGAAACTCTACTAAATTCAGAGATCAGTGCCTTGTAAACATTGAGTCACAACTGG
Downstream sequence
AATTCTGAAGAATGAATAGGGGAAAAAAAGAGCTGGAGAGAAATGCACCCCACTGTAAACTACTTGTGAGTGATGCAGGAGGTTTGGAGCATCTGAGGCA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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