GGH _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001111
Fusion event
HBV-GGH integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
63932951/63020392 (Hg38)
End
63932951/63020392 (Hg38)
Location type
Intronic
Target gene
GGH
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-124-1/Upstream/1305533; hsa-mir-10400/Downstream/1358757;
Nearest TSS
ENST00000518652/Upstream/2422; ENST00000521556/Downstream/3980;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/770887, chr8-CpG: 91/Downstream/18171
Upstream sequence
tcttggacaagttatttaatgtctgtgagcctttatgtattcatatgtaaagcaataataagaatgcTACTAGAATAAGCTTTTATTAGATGATAGGTGT
Downstream sequence
CAACATCTATGAGCCCTAGAAACACAAAGGAGAGTAAGATACAGTTCCTGATCTCAACAAGCTTTTCATCTAGAGGGATGACAGAACAAGAGCAAATACA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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