ATP8B5P _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001116
Fusion event
HBV-ATP8B5P integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
35454512/35454515 (Hg38)
End
35454512/35454515 (Hg38)
Location type
ncRNA_intronic
Target gene
ATP8B5P
Nearest miRNA
hsa-mir-101-2/Upstream/1986580; hsa-let-7a-1/Downstream/153579;
Nearest TSS
ENST00000422679/Upstream/57977; ENST00000468041/Downstream/35612;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/292103, chr9-CpG: 89/Downstream/35192
Upstream sequence
GAACAAGAATGCACACAAAACACACTTGTGCCCACACGCATGGGTTCATACGAACAAGAatgcacacaaaacacacttgtgcccacatgcatgggttcat
Downstream sequence
agaaattcaagataacaggaaggaattcagaattatatcacataaatttaacaaagaggctgaaatagttaaaaagaattaaacagaaattctagagttg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate