Basic Information
VIS ID
TVIS10001125
Fusion event
HBV-chr11 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q13.5
Reference genome
GRCh37/hg19
Start
75287796/75576751 (Hg38)
End
75287796/75576751 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA11H
Nearest miRNA
hsa-mir-10392/Upstream/241565; hsa-let-7a-2/Downstream/3825271;
Nearest TSS
ENST00000527297/Upstream/4837; ENST00000527803/Downstream/6445;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/9764, chr11-CpG: 74/Downstream/6271
Nearby gene
SERPINH1(-3947) ; MAP6(+10167) ;
Upstream sequence
GGGCGCACCCAGTTCACACTGACCCGCCTGGCTGCTCCAGCAAGAATGAGGAAGTGGCTTTGTATTGAAAAGACCCACGCTGAGAAGTGGACAGCTCTTT
Downstream sequence
TCCTTTCTTTTTTTCCATGTCATTTCTCCATTTACCCATTCTTGGTGTAAGCAGAGGTCCCAAGCTCAGCAGGGGAAACTCCAGGCAGAGGAGAGTGCAC
Target sequence
actcagtaatcacacagtcttt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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