Basic Information
VIS ID
TVIS10001132
Fusion event
HBV-LOC105374103 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
129866866/130148023 (Hg38)
End
129866866/130148023 (Hg38)
Location type
Intronic
Target gene
LOC105374103
Nearest miRNA
hsa-let-7g/Upstream/875780; hsa-mir-1224/Downstream/1837832;
Nearest TSS
ENST00000440867/Upstream/35371; ENST00000512482/Downstream/197493;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/35440, chr3-CpG: 31/Downstream/115879
Nearby gene
FAM86HP(-36590) ; COL6A4P2(+64797) ;
Upstream sequence
TTCTAGTAACCTCTGAGTATTATTTCTGTTTGATTGCTAATGTATCTTATATATTTTCTGTATAACTCATCCCTCATTCTTCCTGATCTACATGTGTGGG
Downstream sequence
tacccaaaaacacgcctccccaccacgtgaccatcctcatctatcccagtataccgctgctctctcaggggcatttgtgtccccgttttgggtcttaaat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate