Basic Information
VIS ID
TVIS10001134
Fusion event
HBV-LOC100506974 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
GRCh37/hg19
Start
13694699/13791382 (Hg38)
End
13694699/13791382 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA17A
Target gene
LOC100506974
Nearest miRNA
hsa-mir-1253/Upstream/247736; hsa-mir-10226/Downstream/1460245;
Nearest TSS
ENST00000595228/Upstream/189455; ENST00000580134/Downstream/117849;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/189140, chr17-CpG: 41/Downstream/277931
Nearby gene
HS3ST3A1(-189455) ; CDRT15P1(+233116) ;
Upstream sequence
taagattacttattaaaaaattgttgaaaatagcacaaaatagaccacaagaaaagtccatcaatagggtagtcttgaaatagagcattctatatctttg
Downstream sequence
ctataaaatattatggagctttgaaaaggaatatgaaatggaaaaatcaccaagacatattttcagatgaacaaagcaaactataggacaatatgcatac
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate