Basic Information
VIS ID
TVIS10001137
Fusion event
HBV-LOC107986550 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
q27
Reference genome
GRCh37/hg19
Start
169135275/168735198 (Hg38)
End
169135275/168735198 (Hg38)
Location type
Intronic
Target gene
LOC107986550
Nearest miRNA
hsa-mir-10398/Upstream/1737286; hsa-mir-4644/Downstream/1595563;
Nearest TSS
ENST00000381078/Upstream/18592; ENST00000413324/Downstream/229143;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/161769, chr6-CpG: 14/Downstream/60674
Nearby gene
SMOC2(-66601) ; THBS2(+480600) ;
Upstream sequence
aatacaggtccaattttattctttttcatgtgaatattcagtttttctcggcaccatttattgaagagacatcctttagccgcagtgtgttcttggcacT
Downstream sequence
TTGTGATGCAAGAAATACTCTCTAACCTTCTTGTTTTATAAGCATTCTCAAAATAGCTTCATTTTAAACATAGATGGGAGGATGAGAGAAAGTAACCCTG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate