OR4F5 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001138
Fusion event
HBV-OR4F5 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p36.33
Reference genome
GRCh37/hg19
Start
60212/60212 (Hg38)
End
60212/60212 (Hg38)
Location type
Promoter
Fragile sites / regions
FRA1A
Target gene
OR4F5
Nearest miRNA
hsa-mir-1302-2/Upstream/29709; hsa-mir-101-1/Downstream/127679;
Nearest TSS
ENST00000473358/Upstream/24131; ENST00000335137/Downstream/5207;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/30475, chr1-CpG: 30/Downstream/74912
Upstream sequence
CTTCATTTCTTTATAAATAACTATTTATGAATTGGTGTTGAGCTTAGTAAGTCACCAAACACCTTCTGCTCAGCAGCATAAAGGACATTTCCATGAAACC
Downstream sequence
TCCCAGGGATAATCTTATTTACTCTATAATGTTTCCCGGGTTCAATTCCTCTCCCAAAATTCTTTGTTCTTAAGCCCCTATGATCTGGGTGATCTAAATA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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