OR4F4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001140
Fusion event
HBV-OR4F4 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr15
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
102470655/101930452 (Hg38)
End
102470655/101930452 (Hg38)
Location type
Promoter
Target gene
OR4F4
Nearest miRNA
hsa-mir-10393/Upstream/3145950; hsa-mir-1302-10/Downstream/30007;
Nearest TSS
ENST00000557528/Upstream/7357; ENST00000559252/Downstream/24433;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/165632, chr15-CpG: 116/Downstream/30699
Upstream sequence
TTTAGATCACCCAGATCATAGGGGCTTAAGAACAAAGGATTTTGGGAGAGGAATTGAACCCGGGAAACATTATAGAGTAAATAAGATTATCCCTGGGAGG
Downstream sequence
TTTCATGGAAATGTCCTTTATGCTGCTGAGCAGAAGGTGTTTGGTGACTTACTAAGCTCAACACCAATTCATAAATAGTTATTTATAAAGAAATGAAGTT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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