Basic Information
VIS ID
TVIS10001143
Fusion event
HBV-LOC105371557 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
GRCh37/hg19
Start
15748456/15845142 (Hg38)
End
15748456/15845142 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA17A
Target gene
LOC105371557
Nearest miRNA
hsa-mir-1253/Upstream/593446; hsa-mir-10226/Downstream/436872;
Nearest TSS
ENST00000595228/Upstream/27400; ENST00000582124/Downstream/99775;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/58229, chr17-CpG: 56/Downstream/72164
Nearby gene
MEIS3P1(-55437) ; ADORA2B(+99775) ;
Upstream sequence
gctcatgcctgtaattccagcactttgggaggccaaggcaggagagtcacttgatgtcaggaattcaagaccagcctggcaaacgtgacaaaaccccatc
Downstream sequence
tctactaaacatacaaaaattagccaggcatgatggcatgcacctgtaatcccagctacttgggaggctgaggcaggggaatcgctggaatctgggaggc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate