Basic Information
VIS ID
TVIS10001144
Fusion event
HBV-LOC105371583 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
20566061/20662748 (Hg38)
End
20566061/20662748 (Hg38)
Location type
Intronic
Target gene
LOC105371583
Nearest miRNA
hsa-mir-1180/Upstream/1318174; hsa-mir-10226/Downstream/6631162;
Nearest TSS
ENST00000595228/Upstream/29514; ENST00000578585/Downstream/125323;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/73366, chr17-CpG: 43/Downstream/121508
Nearby gene
CDRT15L2(-81837) ; LOC100287072(+49698) ;
Upstream sequence
gctcatgcctgtaattccagcactttgggaggccaaggcaggagagtcacttgatgtcaggaattcaagaccagcctggcaaacatgacaaaaccccatc
Downstream sequence
tctactaaacatacaaaaattagccaggcatgatggcatgcacctgtaatcccagctacttgggaggctgaggcaggagaatcgctggaatctgggaggc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate