Basic Information
VIS ID
TVIS10001156
Fusion event
HBV-LOC102724431 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
42344829/40199811 (Hg38)
End
42344829/40199811 (Hg38)
Location type
Intronic
Target gene
LOC102724431
Nearest miRNA
hsa-mir-101-2/Upstream/3306280; hsa-let-7a-1/Downstream/729199;
Nearest TSS
ENST00000422679/Upstream/68890; ENST00000611747/Downstream/23474;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/389987, chr9-CpG: 116/Downstream/22257
Nearby gene
FGF7P3(-325245) ; ANKRD20A2(+23474) ;
Upstream sequence
cctaaccctaaccctaaccctaacccctaacccctaacctctaaccctaaaccctaaaccctaaaccctaaaccctaaaccctaaccctaccctaaccct
Downstream sequence
gggttgaatgaaatccacttgatcatggcagatgatctttttattgcattgtcaaatgcaattttcaagtattttgctgaggatttcttacacctctgtt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate