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VISDB
Viral Integration Site DataBase
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TVIS10001171
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001171
Fusion event
HBV-GALNT10 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
153722087/154342527 (Hg38)
End
153722087/154342527 (Hg38)
Location type
Intronic
Target gene
GALNT10
miRNAs that regulate target gene
hsa-mir-122-5p
;
hsa-mir-30e-3p
;
hsa-mir-30d-3p
;
hsa-mir-30a-3p
;
hsa-mir-211-5p
;
hsa-mir-204-5p
;
hsa-mir-5004-5p
;
hsa-mir-3127-5p
;
hsa-mir-6832-3p
;
hsa-mir-6823-5p
;
hsa-mir-6847-5p
;
hsa-mir-6866-3p
;
hsa-mir-188-5p
;
hsa-mir-1197
;
hsa-mir-362-3p
;
hsa-mir-329-3p
;
hsa-mir-6513-5p
;
hsa-mir-887-5p
;
hsa-mir-3913-5p
;
hsa-mir-3122
;
hsa-mir-450a-1-3p
;
hsa-mir-498
;
hsa-mir-5089-5p
;
hsa-mir-6728-5p
;
hsa-mir-769-3p
;
hsa-mir-450b-3p
;
hsa-mir-6836-3p
;
hsa-mir-7975
;
hsa-mir-670-5p
;
hsa-mir-638
;
hsa-mir-4713-3p
;
hsa-mir-6829-3p
;
hsa-mir-6791-3p
;
hsa-mir-6778-3p
;
hsa-mir-676-5p
;
hsa-mir-6752-3p
;
hsa-mir-4646-3p
;
hsa-mir-578
;
hsa-mir-4433b-5p
;
hsa-mir-642a-5p
;
hsa-mir-3655
;
hsa-mir-7110-3p
;
hsa-mir-342-3p
;
hsa-mir-6769b-3p
;
hsa-mir-4723-3p
;
hsa-mir-3183
;
hsa-mir-2276-5p
;
hsa-mir-6892-3p
;
hsa-mir-216b-3p
;
hsa-mir-363-5p
;
hsa-mir-4257
;
hsa-mir-4731-5p
;
hsa-mir-4800-5p
;
hsa-mir-5589-5p
;
hsa-mir-637
;
hsa-mir-6745
;
hsa-mir-6751-5p
;
hsa-mir-6752-5p
;
hsa-mir-6803-5p
;
hsa-mir-6804-5p
;
hsa-mir-6835-5p
;
hsa-mir-6842-5p
;
hsa-mir-7110-5p
;
hsa-mir-8071
Nearest miRNA
hsa-mir-10397/Upstream/2820379; hsa-mir-103a-1/Downstream/4579;
Nearest TSS
ENST00000502646/Upstream/55057;
ENST00000519544/Downstream/33790;
Nearest CpG islands
None/Target,
chr5-CpG: 87/Upstream/151549
,
chr5-CpG: 33/Downstream/62554
Nearest cancer related gene
GALNT10
(OG, No orient, 0)
Upstream sequence
tgaaaccccatctctactaaaaatacaaaaaaaaaaaaaaattagctgggcatggtggcaggcacctctagtcccagctactcgggaggctgaggcagga
Downstream sequence
attttgatAGAGTTGAAAAGATCCTCGTACTTTTGGAAAACACAGGATTCCAGGCATGGCAGGTCACTAAGTGTGCTTTGTGATAGATTTGGATAGTGAT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Sample Information
×
Sample name
075576T
Sample type
Tumor
Gender
Female
CpG Island Information
×
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