Basic Information
VIS ID
TVIS10001175
Fusion event
HBV-LOC105375826 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
50100320/49187761 (Hg38)
End
50100320/49187761 (Hg38)
Location type
Intronic
Target gene
LOC105375826
Nearest miRNA
hsa-mir-124-1/Upstream/6291486; hsa-mir-10400/Downstream/12527027;
Nearest TSS
ENST00000518652/Upstream/19079; ENST00000521574/Downstream/324419;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/209446, chr8-CpG: 49/Downstream/721949
Nearby gene
PPDPFL(-111678) ; SNTG1(+722029) ;
Upstream sequence
gtaatcccagcactttaggaggccaaggcgggcggatcttttgaggtcagaaattccagaccagcctggccaatgtatagaaaccctgtctttactaaaa
Downstream sequence
tacagcactagagcaaatcttaatatatgtaaaattaaaaaaaataagaggtaatgggatcctagaatgaaatgcagaatgtgataaaaggatctaactg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate