Basic Information
VIS ID
TVIS10001176
Fusion event
HBV-chr13 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr13
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
77014602/76440466 (Hg38)
End
77014602/76440466 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA13E
Nearest miRNA
hsa-mir-1297/Upstream/10222142; hsa-mir-1267/Downstream/1257546;
Nearest TSS
ENST00000623511/Upstream/425965; ENST00000646457/Downstream/393373;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/803389, chr13-CpG: 195/Downstream/444721
Nearby gene
LMO7DN(-556654) ; KCTD12(+439702) ;
Upstream sequence
ACGTCTTTTTATACATGCAGTGGATTAGAAATCAAAGCGAGAGAGAGAGAGAGAGAAATTAGAAATTTTATTAAACAGCTTCCTTCTCCATCTCAACCCG
Downstream sequence
GTTTGCAAAGGGGAACATTCTGTATGACTTGGTATTCTTATCTAAATAAATGTGATACTGATTTTAACGAACCCACCATGGCAAAGACTTGGCTGCTCCA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate