Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001177
Fusion event
HBV-STK32A integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
q32
Reference genome
End
146745742/147366179 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-1262 ; hsa-mir-1273g-3p ; hsa-mir-4252 ; hsa-mir-4522 ; hsa-mir-4701-3p ; hsa-mir-4793-3p ; hsa-mir-4797-5p ; hsa-mir-5001-3p ; hsa-mir-508-5p ; hsa-mir-542-3p ; hsa-mir-5586-3p ; hsa-mir-5694 ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-6720-5p ; hsa-mir-6736-5p ; hsa-mir-6742-3p ; hsa-mir-6776-5p ; hsa-mir-6849-3p ; hsa-mir-759 ; hsa-mir-766-3p ; hsa-mir-7703 ; hsa-mir-873-3p
Nearest miRNA
hsa-mir-10397/Upstream/3686208; hsa-mir-103a-1/Downstream/1696134;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/131098, chr5-CpG: 110/Downstream/86818
Upstream sequence
caaagatgcgcgggacgaagaaaagacagaggccggaaaggacagaaacacacggaatgaagaaaagacagaggcccggcatctgtggcacaacgcgggg
Downstream sequence
ATTTCTGACCCTTCATGAACTCATTTTGGCCTCTTAGAACTTCTTCCTCTTCTCAAAGCATCTCTTGGGTTTTTTAACCTCTTGTTCCTTCGCCTATAAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.