Basic Information
VIS ID
TVIS10001178
Fusion event
HBV-chr1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
223229085/223055743 (Hg38)
End
223229085/223055743 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/2855124; hsa-mir-1182/Downstream/1201297;
Nearest TSS
ENST00000473358/Upstream/127302; ENST00000435108/Downstream/76836;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/240524, chr1-CpG: 19/Downstream/25733
Nearby gene
DISP1(-49748) ; TLR5(+53663) ;
Upstream sequence
TGTACCCTGAAGACACCCTGAAGGAAAGACGTCCAAATGGGAACACTGACTATTTATGGGTGGTGGAATTCATGGAGACTTTAGTTTATTTGGTGCCTTC
Downstream sequence
TAGCCATGGATGTTTTCCTATTTCTTGTGCCAAGAAAGGAACACTTGTAGTTTATTGGATTTTCCTTAATATGCAGTTTTTCCAAAGTGTACATTTGGGA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate