Basic Information
VIS ID
TVIS10001197
Fusion event
HBV-LOC107984205 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37/hg19
Start
8229152/8187189 (Hg38)
End
8229152/8187189 (Hg38)
Location type
Intronic
Target gene
LOC107984205
Nearest miRNA
hsa-mir-3155a/Upstream/2034912; hsa-mir-107/Downstream/3943571;
Nearest TSS
ENST00000439456/Upstream/128790; ENST00000413941/Downstream/73615;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/128384, chr10-CpG: 31/Downstream/326506
Nearby gene
GATA3(-111988) ; LINC00708(+72143) ;
Upstream sequence
TTAGCTATGGAAAAGAGATGCACTGCAAGGTCCAGGCCTTAGTCACACTGTACTCTGGCCATCTGAACTAGCCAGTGATAGACCTTATCACTGTGGGTTT
Downstream sequence
TCAATCCATCTGCTTTTCTTTTTTTGGATCCAGGAGACATTGACAGTATAAGGCCTAAGGAAAATTTGTTAAGTAGTTGTTTGTCATAATATTTATTGTA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate