Basic Information
VIS ID
TVIS10001198
Fusion event
HBV-chr17 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
GRCh37/hg19
Start
10858419/10955102 (Hg38)
End
10858419/10955102 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA17A
Nearest miRNA
hsa-mir-1253/Upstream/2768098; hsa-mir-10226/Downstream/1126797;
Nearest TSS
ENST00000595228/Upstream/76909; ENST00000577346/Downstream/286161;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/224929, chr17-CpG: 244/Downstream/285068
Nearby gene
PIRT(-117001) ; SHISA6(+286321) ;
Upstream sequence
TCCTGCCTTGTGCTGTAGTCTCATTCTGGGATCATCTGATTTACTTGTATGGCTAGAGACTCACTTCTGAAAATTGTTGTATGGATGTAGCTTCCAGAAT
Downstream sequence
GAGATCCTGTGCTGACATTTATGTTTTCTTTATTTCTTTTTGAAAAAAATATGCTACATTGAGATAAAGGGGACAAAGTTATGTGAAATTAAATGAACTC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate