hsa-mir-422a _LIHC.png
ZNF609 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001205
Fusion event
HBV-ZNF609 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr15
Cytoband
q22.31
Reference genome
End
64776218/64484019 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10393/Upstream/613000; hsa-mir-11181/Downstream/278368;
Nearby gene
TRIP4(-28716) ; ZNF609(+15401) ;
Upstream sequence
aatagtagaattgagtttttctgcctgcttacttggttttgtgtttttttttcccccattgcactgtgctgcttccttgTTAATCAAATATTAACAAGTT
Downstream sequence
TGATCAGAGGGTGCTGTTTCAGTTTCTTTCCTTTTTTTTTTTTTTGTCCTGGTGACATTGCCTCCAAAGACCATCTTGATGATAAATAAGTTCTATGTGG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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