VISDB Viral Integration Site DataBase

VIS ID

TVIS10001224

Fusion event

HBV-G6PC integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr17

Cytoband

q21.31

Reference genome

Start

End

41060722/42908705 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-23a-3p ; hsa-mir-33b-5p ; hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-106a-3p ; hsa-mir-3650 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-4726-3p ; hsa-mir-1298-3p ; hsa-mir-454-3p ; hsa-mir-3666 ; hsa-mir-4295 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-19a-3p ; hsa-mir-3189-5p ; hsa-mir-4758-3p ; hsa-mir-5699-5p ; hsa-mir-203a-3p ; hsa-mir-4762-5p ; hsa-mir-365b-3p ; hsa-mir-365a-3p ; hsa-mir-539-3p ; hsa-mir-485-3p ; hsa-mir-4536-5p ; hsa-mir-664a-3p ; hsa-mir-6074 ; hsa-mir-3163 ; hsa-mir-577 ; hsa-mir-5692a ; hsa-mir-3662 ; hsa-mir-4668-5p ; hsa-mir-1253 ; hsa-mir-4311 ; hsa-mir-574-5p ; hsa-mir-6821-5p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-4793-5p ; hsa-mir-5196-3p ; hsa-mir-136-3p ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-4284 ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-6890-3p

Nearest miRNA

hsa-mir-1180/Upstream/84762; hsa-mir-10226/Downstream/536101;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/74800, chr17-CpG: 23/Downstream/55627

Upstream sequence

catattggccaggctggtcttgaactcctgacctagtgatccatccgcctcagcctcccaaagtgctgggattgcaggcatgagccaccgcgcctggcct

Downstream sequence

tttttttttttttttgagacggagttttgctcttgttgcccaggctagagtgcagtggcgcagtctcggctcactgtaacctccacctcctgagttcaag