Basic Information
VIS ID
TVIS10001234
Fusion event
HBV-chr8 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
46855961/45944339 (Hg38)
End
46855961/45944339 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/3048064; hsa-mir-10400/Downstream/15770449;
Nearest TSS
ENST00000518652/Upstream/2748171; ENST00000518278/Downstream/877898;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/2667004, chr8-CpG: 41/Downstream/673028
Nearby gene
LINC00293(+896547) ;
Upstream sequence
gtgttaagtcccagacctgaaaatgacacctctcaatcgttttgactcatcttttattggcaagaatgtcattgcatggctacattcaagagtctggctg
Downstream sequence
actcaactgtcagaattgaaccttggtttggacagagcactgttgaaacactctttttgtagaatctgcaggtggatatttggctagctttgaggatttc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate