Basic Information
VIS ID
TVIS10001243
Fusion event
HBV-chr5 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
70250736/70954909 (Hg38)
End
70250736/70954909 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/11251206; hsa-mir-103a-1/Downstream/1214558;
Nearest TSS
ENST00000502646/Upstream/8820; ENST00000510180/Downstream/21319;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/29497, chr5-CpG: 39/Downstream/112653
Nearby gene
SMN2(-1894) ; NAIP(+13574) ;
Upstream sequence
GTCTGGAGGTAGATGTGTGGTCCCCACTGTCCCCTGGCTCTCTGATTTTGATTATCTGTGTTTTTGTTGTATTCTTGGGTCTTTCCACAATTCTGTAGCT
Downstream sequence
CGTTACTAAGAGCAACTCTGggccaggcacggtggcttacacctgtaatcccagcattttgggaggacgagacaggcggatcacttgagcccaggagttc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate