Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001244
Fusion event
HBV-SLC10A1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr14
Cytoband
q24.2
Reference genome
Start
End
70273565/69806848 (Hg38)
Location type
Promoter
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-208a/Upstream/2364918; hsa-mir-1185-1/Downstream/2709972;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/38897, chr14-CpG: 32/Downstream/43282
Upstream sequence
aaaataggccaggtgcagtggctcatgcctgtaatcccagcactttgggaggccgaggtgagtggatcacttgaggtcaggagtttgagaccagcctggg
Downstream sequence
caatatggtgaaaccccatctctactaaaaataaaaaaattttccaggcatggtgacacatgcttgtaatcccagctactcaggaggcttcgaagcagaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.