VISDB Viral Integration Site DataBase

VIS ID

TVIS10001245

Fusion event

HBV-DDX19A integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr16

Cytoband

q22.1

Reference genome

Start

End

70407018/70373115 (Hg38)

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-615-3p ; hsa-mir-31-5p ; hsa-mir-4776-3p ; hsa-mir-192-3p ; hsa-mir-4480 ; hsa-mir-33a-3p ; hsa-mir-409-3p ; hsa-mir-7109-3p ; hsa-mir-6516-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-455-3p ; hsa-mir-127-5p ; hsa-mir-7843-3p ; hsa-mir-6877-5p ; hsa-mir-6781-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-2467-3p ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-6806-3p ; hsa-mir-3928-5p ; hsa-mir-3192-5p ; hsa-mir-194-3p ; hsa-mir-4257 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-320e ; hsa-mir-7850-5p ; hsa-mir-620 ; hsa-mir-1270 ; hsa-mir-4531 ; hsa-mir-7977 ; hsa-mir-139-3p ; hsa-mir-383-3p ; hsa-mir-6854-5p

Nearest miRNA

hsa-mir-1225/Upstream/342693; hsa-mir-11401/Downstream/6495821;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/26019, chr16-CpG: 117/Downstream/7411

Upstream sequence

tgagctcaggcgttcgggaccagcctggccaacatgatgaaaccccgtctctaccaaaaatagaaaaaaatatagccgggcctggtggcgcacgcctgta

Downstream sequence

gtcccagctactcgggaggctgaggtaggaggatcgcttgagcctgggtagaggctgctgtgagctgaaatggcgccactgcactccagcctgggtaaca