SLC26A3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001252
Fusion event
HBV-SLC26A3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
107410689/107770244 (Hg38)
End
107410689/107770244 (Hg38)
Location type
Intronic
Target gene
SLC26A3
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-7-5p ; hsa-mir-494-3p
Nearest miRNA
hsa-mir-10525/Upstream/5298713; hsa-mir-10399/Downstream/6883101;
Nearest TSS
ENST00000635602/Upstream/25663; ENST00000485066/Downstream/6508;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/25668, chr7-CpG: 51/Downstream/120791
Upstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctaaccctaaccc
Downstream sequence
tttttttttttttttttttttttttgatttgagacagggtcttgctctgtcacccaggctagtgtgcagtggcacgatcacagcttaccgcagccttgac
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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