RNF10 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001253
Fusion event
HBV-RNF10 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
q24.31
Reference genome
GRCh37/hg19
Start
120990838/120553035 (Hg38)
End
120990838/120553035 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA12E ; FRA12C
Target gene
RNF10
miRNAs that regulate target gene
hsa-mir-877-3p ; hsa-mir-130b-5p ; hsa-mir-484 ; hsa-mir-320a ; hsa-mir-222-3p ; hsa-mir-218-5p
Nearest miRNA
hsa-let-7i/Upstream/397536; hsa-mir-3612/Downstream/170158;
Nearest TSS
ENST00000382841/Upstream/6578; ENST00000535417/Downstream/1315;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/17983, chr12-CpG: 52/Downstream/27890
Upstream sequence
atgtttggaattggacctagatttgaatcttgtttcggcctttgaccttaagtaacttaacagctttgagatttagcctctcctttataaGGAAGAGGAA
Downstream sequence
AGGtttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttgagatgtagtctcgctctgccacccaggctagag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate