MEGF10 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001255
Fusion event
HBV-MEGF10 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
126583179/127247487 (Hg38)
End
126583179/127247487 (Hg38)
Location type
Intronic
Target gene
MEGF10
Nearest miRNA
hsa-mir-10397/Upstream/8092771; hsa-mir-103a-1/Downstream/1850201;
Nearest TSS
ENST00000502646/Upstream/17678; ENST00000515002/Downstream/43344;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/17599, chr5-CpG: 62/Downstream/42874
Nearby gene
C5orf63(-173995) ; MEGF10(+43277) ;
Upstream sequence
TGGTGGTAACTGGTATGTTAAATTCTCTGACTGACTTTCTTATTTTTACAACCAAAGACAATTCTAATCCAGAACCTTGATATCTTTAAAGTGCTTTTGT
Downstream sequence
aaaTTTAAAGAATCTATGAAGTAAGACAGAAGGAATAAAAAGCTCATGAATTTGATTTATCTATGCAACTTTATTTACAggccataatggagtaactgct
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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