hsa-mir-4646-5p _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001260
Fusion event
HBV-chr7 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q36.1
Reference genome
End
148932156/149235065 (Hg38)
Location type
Promoter;downstream
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10399/Upstream/1856944; hsa-mir-153-2/Downstream/2003356;
Nearest CpG islands
Upstream sequence
CACTAGAAATCCTGTATGAGTGGAGGTATTAGTAACTTAGGCAACCTTCCACTCAATCTTTCTCTTCACTTAAAAATCATTCGTAAACTTACTGATCCAC
Downstream sequence
aggcgtgtgccaccatgcctagctatttttttttttttttttgtagagatggagtcccattatgttgcccaggctggtctccaactcctggcttcaagca
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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