Basic Information
VIS ID
TVIS10001264
Fusion event
HBV-chr4 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
156935133/156013981 (Hg38)
End
156935133/156013981 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/3477465; hsa-mir-1305/Downstream/3114821;
Nearest TSS
ENST00000502981/Upstream/60064; ENST00000510753/Downstream/571998;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/60050, chr4-CpG: 72/Downstream/957563
Nearby gene
CTSO(-60085) ; PDGFC(+747630) ;
Upstream sequence
gagaatggcgtgaacccgggaagcggagcttgcagtgagccgagattgcgccactgcagtccgcagtccggcctgggcgacagagcgagactccgtctca
Downstream sequence
gaagaagaagaagaagaagaagaagaagaaggagaagaagaagaagaagaggaggaggaggaggaggaggaggaggaagaggaagaggaagaggaagagg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate