ARHGAP10 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001279
Fusion event
HBV-ARHGAP10 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
q31.23
Reference genome
GRCh37/hg19
Start
148696118/147774967 (Hg38)
End
148696118/147774967 (Hg38)
Location type
Intronic
Target gene
ARHGAP10
miRNAs that regulate target gene
hsa-mir-17-5p ; hsa-mir-214-3p
Nearest miRNA
hsa-mir-12113/Upstream/430250; hsa-mir-1305/Downstream/7628;
Nearest TSS
ENST00000502981/Upstream/42904; ENST00000513548/Downstream/86016;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/42200, chr4-CpG: 294/Downstream/667093
Upstream sequence
AAATGATTTTCTTCCACATAATCTGTGAAGACAATGTCCAAAGTAGGGAACAAAAAATTGAAGGAGTGTAATATGAAGACAAGAAAGCAGGCTCCACTGT
Downstream sequence
tgatctgggctcactgcaacctctgtcttccagtttcaagtgattctactgcctcaggagtactctacttctgagtagctgggattataggctctcgcca
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate