Basic Information
VIS ID
TVIS10001281
Fusion event
HBV-LINC00410 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr13
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
91551940/90899686 (Hg38)
End
91551940/90899686 (Hg38)
Location type
ncRNA_intronic
Target gene
LINC00410
Nearest miRNA
hsa-mir-1297/Upstream/668409; hsa-mir-1267/Downstream/450919;
Nearest TSS
ENST00000623511/Upstream/406399; ENST00000618596/Downstream/26911;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1536165, chr13-CpG: 49/Downstream/275309
Upstream sequence
GAGTGTGAAGCTAATATATTAACTTTAGCACCTAATTCTCACTAATGATTAACTGACAATGAAATTTCTTAAGCAATTTAGTAATCCTCAATGGGCAAAA
Downstream sequence
CAACAGTTTATTTGAGTGAAGAAGGTGGAAAAAAACCCTTCCTTCTCCTCATCTTGAATTTCTTACTATAGAAAGAGACTCACTACAACATAAAACTTCA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate