Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001283
Fusion event
HBV-PEPD integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr19
Cytoband
q13.11
Reference genome
Start
End
34002349/33511443 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10395/Upstream/13112089; hsa-let-7e/Downstream/1611257;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/109569, chr19-CpG: 56/Downstream/9922
Upstream sequence
CAGCCTGGCAGCTCCTCTACCCTGCTGGGAGCCCTCCCTGATGCTGTGTCAGGCATGTGCCTGAGTCCACCTGTATCCCCACCCCCGGGCCCACAACAGG
Downstream sequence
GCGTCCAGCAGCACCACACGTCCAGCTCAACCCTGCCTCTCTGCCACGTGCAGGCAGGCAAGACGCCCCCCGGATTCTGACGCCCAGGCCGGATATCTGC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.