PRPF31 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001286
Fusion event
HBV-PRPF31 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
q22.32
Reference genome
GRCh37/hg19
Start
98829754/96067472 (Hg38)
End
98829754/96067472 (Hg38)
Location type
ncRNA_intronic
Target gene
PRPF31
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-383-3p
Nearest miRNA
hsa-let-7a-1/Upstream/981378; hsa-mir-12126/Downstream/1296082;
Nearest TSS
ENST00000422679/Upstream/39507; ENST00000432783/Downstream/27739;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/39449, chr9-CpG: 20/Downstream/150739
Upstream sequence
GAAAAAAAATCTGAGCAAATAAAAAGCAATGATATTATAAAACTTGTCTACCCTGATCTTACCTGAAAAAGTCCTCTCACATCTTCCAGCCTTCCACAGT
Downstream sequence
cctgagccaggctccacccatgcccatcagaggggactccataaaggaaggaccccaacaggagggtttttggaagctctccgtgactccgatgtgccgc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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