Basic Information
VIS ID
TVIS10001291
Fusion event
HBV-chr3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
75706163/75657012 (Hg38)
End
75706163/75657012 (Hg38)
Location type
Promoter
Target gene
FRG2C ; FRG2EP
Nearest miRNA
hsa-let-7g/Upstream/26154; hsa-mir-12124/Downstream/81268;
Nearest TSS
ENST00000440867/Upstream/204815; ENST00000308062/Downstream/7318;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1102, chr3-CpG: 40/Downstream/1460
Upstream sequence
attaaatgagcattattctcaattataacactccaggtgaagccttggttgcatagtcaatactaaaaattatatcttggtagaaatgagaacagattct
Downstream sequence
tcccattccatataatgcctttatattttgctgattgtttcctttattgtgcagaaactttttactttgacatagttccacttgttcatttttgcttttg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate