Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001296
Fusion event
HBV-TNNT3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
p15.5
Reference genome
Start
End
1945407/1924177 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-210/Upstream/44030; hsa-let-7a-2/Downstream/72582;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/42073, chr11-CpG: 34/Downstream/2124
Upstream sequence
ctgtctctgtatctttcagcctcttggtctctgtctctccctgcctctctctctcagtctctgtctttcttggcctctctgtccccatttctccacctcc
Downstream sequence
atctccatctctgtctctctgtgtctccatccctCCATGCCACCCCCCAACCCTGTGCTGTAACCCTGGGTGGAGCCTGGAGCCCCCTCCCTGTGCTGGC
Target sequence
GTAAAGTTTACTTTTACTTACATTAACTTAGAATCTTGAACAAATTTATTGTAGTAGTTCTTTAAATAGGAATTGTGTGGGGCTGTCAGATTTCTGTTACGTTGGCGACCAGGGTGGGGAATTTGCTCTATTTGCAGAAGCCAATCTGAGAGCTTATAGTTCTTGAGTTAAAACTGCTGGTTTCACTACAACACTATTGCTGAAAAATTTAGTAGTTTATTGGTTTCTTCTGCACTT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.