Basic Information
VIS ID
TVIS10001305
Fusion event
HBV-chr7 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
9232525/9192895 (Hg38)
End
9232525/9192895 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-339/Upstream/2125850; hsa-mir-10399/Downstream/8934325;
Nearest TSS
ENST00000635602/Upstream/3038; ENST00000447999/Downstream/544427;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/749763, chr7-CpG: 47/Downstream/533137
Nearby gene
NXPH1(-439932) ; PER4(+441375) ;
Upstream sequence
caggaggatgaggcacaagaatcacttgaatccaggaggcggaggttgcagtgggctgagattgcaccaccacactccagcctgggtgacagagcaagac
Downstream sequence
TTACTCACATGCAGAGTAAATTCTTAGGATTTGTACTGGGCATATTCATATATGTTTTGAGGATGAAATGGGTCTTCAAGGGGCAACATTCATAAAAATG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate