BCAR3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001329
Fusion event
HBV-BCAR3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
94283668/93818112 (Hg38)
End
94283668/93818112 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1D
Target gene
BCAR3
miRNAs that regulate target gene
hsa-mir-196b-5p
Nearest miRNA
hsa-mir-101-1/Upstream/7460425; hsa-mir-11399/Downstream/28720;
Nearest TSS
ENST00000473358/Upstream/136283; ENST00000439455/Downstream/27600;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/136164, chr1-CpG: 162/Downstream/28176
Upstream sequence
ACCGGTGACGCACTGGTTCCCAGGGCCCCTGGTTTGAGTGTTAACCACGTGCCACTTTATGGTACTCTTAatactgctgactttgctatgttatttttca
Downstream sequence
tgtgctagtgcttcccacaattagattataagctctttgagtgccaagtgtctccttttgtactttgtgacagttttcttaacacgtacatcagtgcttt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate