Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001356
Fusion event
HBV-CHST11 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
q23.3
Reference genome
End
105031125/104637347 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-186-5p ; hsa-mir-98-5p ; hsa-mir-6761-5p ; hsa-mir-6510-5p ; hsa-mir-6731-5p ; hsa-mir-8085 ; hsa-mir-3185 ; hsa-mir-6125 ; hsa-mir-4719 ; hsa-mir-185-5p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-574-5p ; hsa-mir-147a ; hsa-mir-6818-5p ; hsa-mir-135b-3p ; hsa-mir-6824-5p ; hsa-mir-6867-5p ; hsa-mir-6825-5p ; hsa-mir-7106-5p ; hsa-mir-7154-3p ; hsa-mir-6783-5p
Nearest miRNA
hsa-let-7i/Upstream/45631; hsa-mir-1178/Downstream/3998463;
Nearest CpG islands
Upstream sequence
gagctgtgattgcaccaacagcattccagcctgggccatgggagtgagaccctgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGggggttggggg
Downstream sequence
aggggggagggatagcattaggagatatacctaatgctaaatgatgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacct
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.