Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene723379773466857479897730428473287247356847
CD163L1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001372
Fusion event
HBV-CD163L1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
7509443/7356847 (Hg38)
End
7509443/7356847 (Hg38)
Location type
Intronic
Target gene
CD163L1
miRNAs that regulate target gene
hsa-mir-590-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-141/Upstream/392656; hsa-let-7i/Downstream/1882620;
Nearest TSS
ENST00000382841/Upstream/46174; ENST00000345088/Downstream/759;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/166645, chr12-CpG: 70/Downstream/82963
Upstream sequence
TGTGCTGGATTTTCTAGTTGACTTTGATTTTAGTTATTTGTCCTGGCACCAGTAAGTGTTTTAGAACTGCCTCAATGCAACATTATTATATAACGAGTGC
Downstream sequence
TTGTTTTTCTAAACCTTTAGAGAATGATTTCACTGCTATTACGTTAATGTTTTCTCATCAGACAAAGCCACCTACGTTTAATAAATATAAAGCATGTATC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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