Basic Information
VIS ID
TVIS10001373
Fusion event
HBV-LOC105369649 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
9494918/9342322 (Hg38)
End
9494918/9342322 (Hg38)
Location type
Intronic
Target gene
LOC105369649
Nearest miRNA
hsa-mir-1244-3/Upstream/102771; hsa-let-7i/Downstream/2769630;
Nearest TSS
ENST00000382841/Upstream/95825; ENST00000567749/Downstream/25142;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/58264, chr12-CpG: 66/Downstream/105497
Nearby gene
LOC642846(-28234) ; DDX12P(+75369) ;
Upstream sequence
ACCCATCCCCAGTCTTTCTCTTGCTGCCCTGCATGTGGTGTTCCTCCTCTTTTCAAGACAAAGCTGCTCACCTGAATTTCCCTTCCTCAGCTCCTGCCAC
Downstream sequence
CTTCAAGACCACGCTCTGTCAGTTATCATCTCTCTCCTAAATTTTTAACTTCTCTCTTTTTCCTCTGCCAGATGCATAACCAAGTCTGTCAGATTAACCT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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